HL_9RTU_079

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RTU_079 not in the Motif Atlas

Geometric match to HL_8B0X_007

Geometric discrepancy: 0.109

The information below is about HL_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9RTU|1|a|A|320
9RTU|1|a|A|321
9RTU|1|a|C|322
9RTU|1|a|U|323
9RTU|1|a|G|324
9RTU|1|a|A|325
9RTU|1|a|G|326
9RTU|1|a|A|327
9RTU|1|a|C|328
9RTU|1|a|A|329
9RTU|1|a|C|330
9RTU|1|a|G|331
9RTU|1|a|G|332
9RTU|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20