HL_9RTV_079

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RTV_079 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.186

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9RTV|1|a|A|320
9RTV|1|a|A|321
9RTV|1|a|C|322
9RTV|1|a|U|323
9RTV|1|a|G|324
9RTV|1|a|A|325
9RTV|1|a|G|326
9RTV|1|a|A|327
9RTV|1|a|C|328
9RTV|1|a|A|329
9RTV|1|a|C|330
9RTV|1|a|G|331
9RTV|1|a|G|332
9RTV|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20