HL_9RU8_040
3D structure
- PDB id
- 9RU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9RU8|1|L5|A|3642, 9RU8|1|L5|A|3643, 9RU8|1|L5|U|3644, 9RU8|1|L5|A|3648
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RU8_040 not in the Motif Atlas
- Homologous match to HL_9H3G_049
- Geometric discrepancy: 0.0981
- The information below is about HL_9H3G_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.4
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 11
Unit IDs
9RU8|1|L5|PSU|3639
9RU8|1|L5|U|3640
9RU8|1|L5|U|3641
9RU8|1|L5|A|3642
9RU8|1|L5|A|3643
9RU8|1|L5|U|3644
9RU8|1|L5|U|3645
9RU8|1|L5|A|3646
9RU8|1|L5|A|3647
9RU8|1|L5|A|3648
9RU8|1|L5|A|3649
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain Lj
- Large ribosomal subunit protein eL37
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