HL_9RU8_070

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GU(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU8_070 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.1297

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9RU8|1|Pt|G|54
9RU8|1|Pt|U|55
9RU8|1|Pt|PSU|56
9RU8|1|Pt|C|57
9RU8|1|Pt|A|58
9RU8|1|Pt|A|59
9RU8|1|Pt|A|60
9RU8|1|Pt|U|61
9RU8|1|Pt|C|62

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

Large ribosomal subunit protein eL42