HL_9RU8_080

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU8_080 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.0837

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RU8|1|S2|C|618
9RU8|1|S2|A|619
9RU8|1|S2|G|620
9RU8|1|S2|C|621
9RU8|1|S2|C|622
9RU8|1|S2|G|623

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

Small ribosomal subunit protein uS12