HL_9RU9_002
3D structure
- PDB id
- 9RU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9RU9|1|Et|A|35, 9RU9|1|Et|A|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RU9_002 not in the Motif Atlas
- Homologous match to HL_2ZZM_002
- Geometric discrepancy: 0.2843
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9RU9|1|Et|G|31
9RU9|1|Et|C|32
9RU9|1|Et|C|33
9RU9|1|Et|C|34
9RU9|1|Et|A|35
9RU9|1|Et|U|36
9RU9|1|Et|A|37
9RU9|1|Et|A|38
9RU9|1|Et|C|39
Current chains
- Chain Et
- E site tRNA
Nearby chains
- Chain Pt
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
- Chain Sc
- 40S ribosomal protein S28
- Chain mR
- Kozak mRNA
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