HL_9RU9_006

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU9_006 not in the Motif Atlas

Homologous match to HL_8GLP_003

Geometric discrepancy: 0.0532

The information below is about HL_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9RU9|1|L5|C|89
9RU9|1|L5|G|90
9RU9|1|L5|G|91
9RU9|1|L5|C|92
9RU9|1|L5|G|93
9RU9|1|L5|A|94
9RU9|1|L5|G|95

Current chains

Chain L5

23S rRNA

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42