HL_9RU9_008

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9RU9|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU9_008 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.0611

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9RU9|1|L5|U|204
9RU9|1|L5|C|205
9RU9|1|L5|U|206
9RU9|1|L5|G|207
9RU9|1|L5|A|208
9RU9|1|L5|U|209
9RU9|1|L5|C|210
9RU9|1|L5|G|211

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32