HL_9RU9_012

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9RU9|1|L5|G|315, 9RU9|1|L5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|G|314
9RU9|1|L5|G|315
9RU9|1|L5|U|316
9RU9|1|L5|A|317
9RU9|1|L5|A|318
9RU9|1|L5|A|319
9RU9|1|L5|C|320
9RU9|1|L5|U|321
9RU9|1|L5|C|322
9RU9|1|L5|C|323

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

Large ribosomal subunit protein uL15

Chain Li

60S ribosomal protein L36

Chain Lo

Large ribosomal subunit protein eL42