HL_9RUA_028

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

9RUA|1|L5|G|2421, 9RUA|1|L5|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RUA_028 not in the Motif Atlas

Homologous match to HL_8GLP_034

Geometric discrepancy: 0.0448

The information below is about HL_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9RUA|1|L5|A|2420
9RUA|1|L5|G|2421
9RUA|1|L5|OMC|2422
9RUA|1|L5|A|2423
9RUA|1|L5|OMG|2424
9RUA|1|L5|U|2425
9RUA|1|L5|U|2426

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

60S ribosomal protein L19

Chain Ll

Large ribosomal subunit protein eL39