HL_9RUC_008

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9RUC|1|L5|G|315, 9RUC|1|L5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|G|314
9RUC|1|L5|G|315
9RUC|1|L5|U|316
9RUC|1|L5|A|317
9RUC|1|L5|A|318
9RUC|1|L5|A|319
9RUC|1|L5|C|320
9RUC|1|L5|U|321
9RUC|1|L5|C|322
9RUC|1|L5|C|323

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain La

Large ribosomal subunit protein uL15

Chain Li

60S ribosomal protein L36

Chain Lo

Large ribosomal subunit protein eL42