HL_9RUC_010

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RUC_010 not in the Motif Atlas

Homologous match to HL_8GLP_118

Geometric discrepancy: 0.0642

The information below is about HL_8GLP_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RUC|1|L5|U|393
9RUC|1|L5|G|394
9RUC|1|L5|A|395
9RUC|1|L5|A|396
9RUC|1|L5|G|397
9RUC|1|L5|A2M|398

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22