HL_9RUC_017

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9RUC|1|L5|U|1596, 9RUC|1|L5|A|1600, 9RUC|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RUC_017 not in the Motif Atlas

Homologous match to HL_8GLP_023

Geometric discrepancy: 0.0448

The information below is about HL_8GLP_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.4

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

13

Unit IDs

9RUC|1|L5|A|1593
9RUC|1|L5|C|1594
9RUC|1|L5|G|1595
9RUC|1|L5|U|1596
9RUC|1|L5|G|1597
9RUC|1|L5|C|1598
9RUC|1|L5|A|1599
9RUC|1|L5|A|1600
9RUC|1|L5|A|1601
9RUC|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22

Chain Lj

Large ribosomal subunit protein eL37