HL_9RUC_032

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9RUC|1|L5|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RUC_032 not in the Motif Atlas

Homologous match to HL_9PN5_036

Geometric discrepancy: 0.2246

The information below is about HL_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9RUC|1|L5|G|2624
9RUC|1|L5|U|2625
9RUC|1|L5|U|2626
9RUC|1|L5|C|2627
9RUC|1|L5|U|2628
9RUC|1|L5|C|2629
9RUC|1|L5|U|2630
9RUC|1|L5|U|2631
9RUC|1|L5|PSU|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22