HL_9RUC_047

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9RUC|1|L5|A|4214, 9RUC|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|U|4210
9RUC|1|L5|C|4211
9RUC|1|L5|A|4212
9RUC|1|L5|A|4213
9RUC|1|L5|A|4214
9RUC|1|L5|C|4215
9RUC|1|L5|G|4216
9RUC|1|L5|G|4217
9RUC|1|L5|U|4218
9RUC|1|L5|A|4219
9RUC|1|L5|6MZ|4220
9RUC|1|L5|C|4221
9RUC|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29