HL_9RUC_075

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9RUC|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RUC_075 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.1907

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9RUC|1|S2|C|462
9RUC|1|S2|C|463
9RUC|1|S2|A|464
9RUC|1|S2|A|465
9RUC|1|S2|G|466
9RUC|1|S2|G|467

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6