HL_9S3B_003
3D structure
- PDB id
- 9S3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9S3B_003 not in the Motif Atlas
- Homologous match to HL_4MGN_004
- Geometric discrepancy: 0.0824
- The information below is about HL_4MGN_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9S3B|1|CP|G|52
9S3B|1|CP|U|53
9S3B|1|CP|U|54
9S3B|1|CP|C|55
9S3B|1|CP|A|56
9S3B|1|CP|A|57
9S3B|1|CP|A|58
9S3B|1|CP|U|59
9S3B|1|CP|C|60
Current chains
- Chain CP
- prolyl-tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: