HL_9S3B_034

3D structure

PDB id

9S3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9S3B|1|L5|G|2421, 9S3B|1|L5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S3B_034 not in the Motif Atlas

Homologous match to HL_8GLP_034

Geometric discrepancy: 0.0735

The information below is about HL_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9S3B|1|L5|A|2420
9S3B|1|L5|G|2421
9S3B|1|L5|C|2422
9S3B|1|L5|A|2423
9S3B|1|L5|G|2424
9S3B|1|L5|U|2425
9S3B|1|L5|U|2426

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39