HL_9S3D_066

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S3D_066 not in the Motif Atlas

Homologous match to HL_8GLP_070

Geometric discrepancy: 0.0467

The information below is about HL_8GLP_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9S3D|1|L5|C|4603
9S3D|1|L5|G|4604
9S3D|1|L5|A|4605
9S3D|1|L5|G|4606
9S3D|1|L5|A|4607
9S3D|1|L5|G|4608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CR

Eukaryotic peptide chain release factor subunit 1

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40