HL_9S3D_078

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

9S3D|1|L8|U|124, 9S3D|1|L8|C|125, 9S3D|1|L8|C|126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S3D_078 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3418

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

9S3D|1|L8|G|122
9S3D|1|L8|U|123
9S3D|1|L8|U|124
9S3D|1|L8|C|125
9S3D|1|L8|C|126
9S3D|1|L8|U|127
9S3D|1|L8|C|128

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a