HL_9S7B_012

3D structure

PDB id

9S7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

9S7B|1|A|A|2110, 9S7B|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7B_012 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2677

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9S7B|1|A|G|2107
9S7B|1|A|G|2108
9S7B|1|A|A|2109
9S7B|1|A|A|2110
9S7B|1|A|C|2111
9S7B|1|A|A|2112
9S7B|1|A|G|2113
9S7B|1|A|C|2114

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL10m

Chain N

Large ribosomal subunit protein uL16m

Chain o

Large ribosomal subunit protein mL63