HL_9S7B_039

3D structure

PDB id

9S7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9S7B|1|AA|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7B_039 not in the Motif Atlas

Homologous match to HL_8B0X_001

Geometric discrepancy: 0.1268

The information below is about HL_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.3

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9S7B|1|AA|U|7
9S7B|1|AA|U|8
9S7B|1|AA|U|9
9S7B|1|AA|G|10
9S7B|1|AA|G|11
9S7B|1|AA|U|12
9S7B|1|AA|C|13
9S7B|1|AA|C|14
9S7B|1|AA|U|15
9S7B|1|AA|A|16
9S7B|1|AA|G|17

Current chains

Chain AA

Large ribosomal subunit protein mL32

Nearby chains

Chain AD

Small ribosomal subunit protein uS5m

Chain Az

mRNA (Visualization example)