HL_9S7D_003

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_003 not in the Motif Atlas

Homologous match to HL_8B0X_046

Geometric discrepancy: 0.0894

The information below is about HL_8B0X_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9S7D|1|A|C|1786
9S7D|1|A|G|1787
9S7D|1|A|C|1788
9S7D|1|A|A|1789
9S7D|1|A|A|1790
9S7D|1|A|G|1791

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34m

Chain 9

Large ribosomal subunit protein mL41

Chain Av

COX1 nascent chain

Chain F

Large ribosomal subunit protein uL4m

Chain U

Large ribosomal subunit protein uL23m