HL_9S7D_033

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_033 not in the Motif Atlas

Homologous match to HL_8B0X_089

Geometric discrepancy: 0.1238

The information below is about HL_8B0X_089

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9S7D|1|A|U|3038
9S7D|1|A|OMU|3039
9S7D|1|A|OMG|3040
9S7D|1|A|U|3041
9S7D|1|A|U|3042
9S7D|1|A|C|3043
9S7D|1|A|A|3044

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Aw

Transfer RNA; tRNA