HL_9S7D_046

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_046 not in the Motif Atlas

Homologous match to HL_8B0X_099

Geometric discrepancy: 0.2765

The information below is about HL_8B0X_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9S7D|1|AA|C|247
9S7D|1|AA|C|248
9S7D|1|AA|A|249
9S7D|1|AA|C|250
9S7D|1|AA|C|251
9S7D|1|AA|G|252

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS12m

Chain AO

Small ribosomal subunit protein mS40

Chain Az

mRNA (Visualization example)