HL_9S7D_049
3D structure
- PDB id
- 9S7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GA(5MU)UAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9S7D|1|AA|U|434
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9S7D_049 not in the Motif Atlas
- Homologous match to HL_8B0X_016
- Geometric discrepancy: 0.1044
- The information below is about HL_8B0X_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9S7D|1|AA|G|427
9S7D|1|AA|A|428
9S7D|1|AA|5MU|429
9S7D|1|AA|U|430
9S7D|1|AA|A|431
9S7D|1|AA|G|432
9S7D|1|AA|A|433
9S7D|1|AA|U|434
9S7D|1|AA|A|435
9S7D|1|AA|C|436
9S7D|1|AA|C|437
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- Small ribosomal subunit protein uS7m
- Chain AI
- Small ribosomal subunit protein uS11m
- Chain AQ
- Small ribosomal subunit protein bS21m
- Chain Ax
- Transfer RNA; tRNA
- Chain Az
- mRNA (Visualization example)
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