HL_9S7D_056

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_056 not in the Motif Atlas

Geometric match to HL_4WJ4_003

Geometric discrepancy: 0.1995

The information below is about HL_4WJ4_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9S7D|1|AA|A|752
9S7D|1|AA|U|753
9S7D|1|AA|G|754
9S7D|1|AA|A|755
9S7D|1|AA|A|756
9S7D|1|AA|A|757
9S7D|1|AA|C|758
9S7D|1|AA|U|759
9S7D|1|AA|U|760

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS14m

Chain AZ

Small ribosomal subunit protein mS33