HL_9S7D_059

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGG(MA6)(MA6)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_059 not in the Motif Atlas

Homologous match to HL_8B0X_029

Geometric discrepancy: 0.1352

The information below is about HL_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9S7D|1|AA|U|933
9S7D|1|AA|G|934
9S7D|1|AA|G|935
9S7D|1|AA|MA6|936
9S7D|1|AA|MA6|937
9S7D|1|AA|A|938

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Small ribosomal subunit protein bS22, mitochondrial