HL_9S7D_062

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAAU

Length

5 nucleotides

Bulged bases

9S7D|1|Aw|A|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_062 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.3613

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9S7D|1|Aw|A|53
9S7D|1|Aw|U|54
9S7D|1|Aw|A|55
9S7D|1|Aw|A|56
9S7D|1|Aw|U|61

Current chains

Chain Aw

A-site tRNA (Visualisation example)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain N

Large ribosomal subunit protein uL16m