HL_9S7E_019

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

9S7E|1|A|A|2430, 9S7E|1|A|A|2432, 9S7E|1|A|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7E_019 not in the Motif Atlas

Homologous match to HL_8B0X_068

Geometric discrepancy: 0.141

The information below is about HL_8B0X_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9S7E|1|A|C|2428
9S7E|1|A|A|2429
9S7E|1|A|A|2430
9S7E|1|A|C|2431
9S7E|1|A|A|2432
9S7E|1|A|C|2433
9S7E|1|A|A|2434
9S7E|1|A|G|2435

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34m

Chain 9

Large ribosomal subunit protein mL41

Chain Av

COX1 nascent chain

Chain T

Large ribosomal subunit protein uL22m

Chain U

Large ribosomal subunit protein uL23m