HL_9S7E_052

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

9S7E|1|AA|C|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7E_052 not in the Motif Atlas

Homologous match to HL_8B0X_019

Geometric discrepancy: 0.184

The information below is about HL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9S7E|1|AA|G|570
9S7E|1|AA|A|571
9S7E|1|AA|U|572
9S7E|1|AA|A|573
9S7E|1|AA|A|574
9S7E|1|AA|A|575
9S7E|1|AA|C|576
9S7E|1|AA|C|577
9S7E|1|AA|C|578
9S7E|1|AA|C|579

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS9m

Chain AH

Small ribosomal subunit protein uS10m

Chain Aw

Transfer RNA; tRNA

Chain Ax

Transfer RNA; tRNA