HL_9SDF_008

3D structure

PDB id

9SDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure at 1.9 A resolution of Thermus thermophilus tyrosyl-tRNA synthetase bound to wild-type modified tRNA(Tyr), tyrosine and AMP

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

G(A1I9V)(PSU)CG(1MA)AUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A1I9V, PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SDF_008 not in the Motif Atlas

Geometric match to HL_3ZGZ_003

Geometric discrepancy: 0.1058

The information below is about HL_3ZGZ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9SDF|1|T|G|63||||2_756
9SDF|1|T|A1I9V|64||||2_756
9SDF|1|T|PSU|65||||2_756
9SDF|1|T|C|66||||2_756
9SDF|1|T|G|67||||2_756
9SDF|1|T|1MA|68||||2_756
9SDF|1|T|A|69||||2_756
9SDF|1|T|U|70||||2_756
9SDF|1|T|C|71||||2_756

Current chains

Chain T

Thermus thermophilus tRNA(Tyr)(GUA) (86-MER)

Nearby chains