HL_9SLG_006

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9SLG|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.3393

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SLG|1|A|G|259
9SLG|1|A|G|260
9SLG|1|A|U|261
9SLG|1|A|A|262
9SLG|1|A|A|263
9SLG|1|A|C|264
9SLG|1|A|G|265
9SLG|1|A|G|266
9SLG|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20