HL_9SLG_008

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1813

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SLG|1|A|A|320
9SLG|1|A|A|321
9SLG|1|A|C|322
9SLG|1|A|U|323
9SLG|1|A|G|324
9SLG|1|A|A|325
9SLG|1|A|G|326
9SLG|1|A|A|327
9SLG|1|A|C|328
9SLG|1|A|A|329
9SLG|1|A|C|330
9SLG|1|A|G|331
9SLG|1|A|G|332
9SLG|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20