HL_9SLG_018

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9SLG|1|A|U|842, 9SLG|1|A|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_018 not in the Motif Atlas

Geometric match to HL_9H3G_024

Geometric discrepancy: 0.3205

The information below is about HL_9H3G_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9SLG|1|A|C|840
9SLG|1|A|C|841
9SLG|1|A|U|842
9SLG|1|A|U|843
9SLG|1|A|G|844
9SLG|1|A|A|845
9SLG|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain R

Small ribosomal subunit protein bS18