HL_9SLG_048
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9SLG|1|a|A|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SLG_048 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1736
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
9SLG|1|a|U|568
9SLG|1|a|U|569
9SLG|1|a|U|570
9SLG|1|a|U|571
9SLG|1|a|G|572
9SLG|1|a|U|573
9SLG|1|a|A|574
9SLG|1|a|U|575
9SLG|1|a|A|576
9SLG|1|a|A|577
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain k
- Large ribosomal subunit protein uL15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: