HL_9SLG_057

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9SLG|1|a|U|960, 9SLG|1|a|C|963

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_057 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1982

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9SLG|1|a|PSU|957
9SLG|1|a|G|958
9SLG|1|a|C|959
9SLG|1|a|U|960
9SLG|1|a|A|961
9SLG|1|a|A|962
9SLG|1|a|C|963
9SLG|1|a|G|964

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

Large ribosomal subunit protein uL16