HL_9SLG_072

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9SLG|1|a|A|1636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_072 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.078

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9SLG|1|a|A|1632
9SLG|1|a|G|1633
9SLG|1|a|A|1634
9SLG|1|a|G|1635
9SLG|1|a|A|1636
9SLG|1|a|A|1637
9SLG|1|a|U|1638

Current chains

Chain a

23S ribosomal RNA

Nearby chains