HL_9SLG_076

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9SLG|1|a|A|1782, 9SLG|1|a|U|1783, 9SLG|1|a|U|1784, 9SLG|1|a|A|1788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_076 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.0641

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9SLG|1|a|U|1779
9SLG|1|a|U|1780
9SLG|1|a|U|1781
9SLG|1|a|A|1782
9SLG|1|a|U|1783
9SLG|1|a|U|1784
9SLG|1|a|A|1785
9SLG|1|a|A|1786
9SLG|1|a|A|1787
9SLG|1|a|A|1788
9SLG|1|a|A|1789

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2