HL_9SLG_079

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9SLG|1|a|A|1917

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_079 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.0908

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SLG|1|a|G|1914
9SLG|1|a|PSU|1915
9SLG|1|a|A|1916
9SLG|1|a|A|1917
9SLG|1|a|C|1918
9SLG|1|a|3TD|1919
9SLG|1|a|A|1920
9SLG|1|a|PSU|1921
9SLG|1|a|A|1922
9SLG|1|a|A|1923
9SLG|1|a|C|1924

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Y

Ribosome-associated inhibitor A