HL_9SLG_082

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

9SLG|1|a|C|2149

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_082 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2313

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_58375.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9SLG|1|a|C|2147
9SLG|1|a|G|2148
9SLG|1|a|C|2149
9SLG|1|a|C|2150
9SLG|1|a|A|2151
9SLG|1|a|G|2152

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11