HL_9SLG_086

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_086 not in the Motif Atlas

Geometric match to HL_8B0X_101

Geometric discrepancy: 0.0839

The information below is about HL_8B0X_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SLG|1|a|G|2308
9SLG|1|a|U|2309
9SLG|1|a|C|2310
9SLG|1|a|G|2311
9SLG|1|a|G|2312
9SLG|1|a|A|2313
9SLG|1|a|C|2314
9SLG|1|a|A|2315
9SLG|1|a|U|2316

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5