HL_9SPF_001
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCUIAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SPF_001 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.2037
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9SPF|1|At|G|31
9SPF|1|At|C|32
9SPF|1|At|U|33
9SPF|1|At|I|34
9SPF|1|At|A|35
9SPF|1|At|U|36
9SPF|1|At|A|37
9SPF|1|At|A|38
9SPF|1|At|C|39
Current chains
- Chain At
- A-site-tRNA-Ile-AAT-9-1
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Mr
- synthetic mRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SX
- 40S ribosomal protein S23
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