HL_9SPF_018

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCGCUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SPF_018 not in the Motif Atlas

Homologous match to HL_8GLP_019

Geometric discrepancy: 0.3099

The information below is about HL_8GLP_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86834.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SPF|1|L5|G|1406
9SPF|1|L5|C|1407
9SPF|1|L5|G|1408
9SPF|1|L5|C|1409
9SPF|1|L5|U|1410
9SPF|1|L5|C|1411

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

Large ribosomal subunit protein eL29