HL_9SPF_069
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9SPF|1|L8|C|81, 9SPF|1|L8|A|84, 9SPF|1|L8|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L8|G|68
9SPF|1|L8|PSU|69
9SPF|1|L8|G|70
9SPF|1|L8|A|71
9SPF|1|L8|A|72
9SPF|1|L8|U|73
9SPF|1|L8|U|74
9SPF|1|L8|OMG|75
9SPF|1|L8|C|76
9SPF|1|L8|A|77
9SPF|1|L8|G|78
9SPF|1|L8|G|79
9SPF|1|L8|A|80
9SPF|1|L8|C|81
9SPF|1|L8|A|82
9SPF|1|L8|C|83
9SPF|1|L8|A|84
9SPF|1|L8|U|85
9SPF|1|L8|U|86
9SPF|1|L8|G|87
9SPF|1|L8|A|88
9SPF|1|L8|U|89
9SPF|1|L8|C|90
Current chains
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: