HL_9SPF_072
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACUICG(1MG)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 1MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SPF_072 not in the Motif Atlas
- Homologous match to HL_9MTS_102
- Geometric discrepancy: 0.0978
- The information below is about HL_9MTS_102
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9SPF|1|Pt|A|31
9SPF|1|Pt|C|32
9SPF|1|Pt|U|33
9SPF|1|Pt|I|34
9SPF|1|Pt|C|35
9SPF|1|Pt|G|36
9SPF|1|Pt|1MG|37
9SPF|1|Pt|A|38
9SPF|1|Pt|U|39
Current chains
- Chain Pt
- P-site tRNA-Arg-ACG
Nearby chains
- Chain Mr
- synthetic mRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SQ
- 40S ribosomal protein S16
Coloring options: