HL_9SPF_086

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGGUGAAAU(PSU)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|A|957
9SPF|1|S2|G|958
9SPF|1|S2|G|959
9SPF|1|S2|U|960
9SPF|1|S2|G|961
9SPF|1|S2|A|962
9SPF|1|S2|A|963
9SPF|1|S2|A|964
9SPF|1|S2|U|965
9SPF|1|S2|PSU|966

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26