HL_9SPF_086
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGGUGAAAU(PSU)
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SPF_086 not in the Motif Atlas
- Homologous match to HL_9H3G_093
- Geometric discrepancy: 0.0608
- The information below is about HL_9H3G_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9SPF|1|S2|A|957
9SPF|1|S2|G|958
9SPF|1|S2|G|959
9SPF|1|S2|U|960
9SPF|1|S2|G|961
9SPF|1|S2|A|962
9SPF|1|S2|A|963
9SPF|1|S2|A|964
9SPF|1|S2|U|965
9SPF|1|S2|PSU|966
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S3a
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
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