HL_9SPF_094

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SPF_094 not in the Motif Atlas

Homologous match to HL_9H3G_101

Geometric discrepancy: 0.0626

The information below is about HL_9H3G_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9SPF|1|S2|A|1353
9SPF|1|S2|G|1354
9SPF|1|S2|C|1355
9SPF|1|S2|G|1356
9SPF|1|S2|A|1357
9SPF|1|S2|U|1358

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SC

40S ribosomal protein S2