HL_9SPI_002
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUCG(MA7)UCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MA7
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SPI_002 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.1179
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9SPI|1|At|G|53
9SPI|1|At|U|54
9SPI|1|At|U|55
9SPI|1|At|C|56
9SPI|1|At|G|57
9SPI|1|At|MA7|58
9SPI|1|At|U|59
9SPI|1|At|C|60
9SPI|1|At|C|61
Current chains
- Chain At
- tRNA-Ile-AAT-9-1
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10
Coloring options: