HL_9SPI_008

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9SPI|1|L5|G|232, 9SPI|1|L5|U|233, 9SPI|1|L5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SPI_008 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.1706

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9SPI|1|L5|G|230
9SPI|1|L5|U|231
9SPI|1|L5|G|232
9SPI|1|L5|U|233
9SPI|1|L5|G|234
9SPI|1|L5|A|235
9SPI|1|L5|G|236
9SPI|1|L5|G|237
9SPI|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26